JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0512.1 Rxra Mus musculus Nuclear RXR-related
MA0512.2 Rxra Mus musculus Nuclear RXR-related
MA0514.1 Sox3 Mus musculus High-mobility SOX-related
MA0514.2 Sox3 Mus musculus High-mobility SOX-related
MA0514.3 Sox3 Mus musculus High-mobility SOX-related
MA0515.1 Sox6 Mus musculus High-mobility SOX-related
MA0516.1 SP2 Homo sapiens C2H2 Three-zinc
MA0516.2 SP2 Homo sapiens C2H2 Three-zinc
MA0516.3 SP2 Homo sapiens C2H2 Three-zinc
MA0517.1 STAT1::STAT2 Homo sapiens STAT STAT
Showing 10 profiles of page 101 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.