Detailed information of matrix profile MA1305.1

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Profile summary
Name: WRKY55
Matrix ID: MA1305.1
Class: GCM
Family: WRKY
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 11449049
Uniprot ID: Q9SHB5  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 188 141 71 31 0 0 0 599 0 0 90 126 ]
C [ 73 148 415 2 0 0 0 0 599 128 72 65 ]
G [ 186 167 59 543 0 0 599 0 0 1 48 103 ]
T [ 152 143 54 23 599 599 0 0 0 470 389 305 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1305.1 MA1305 1 WRKY55 Arabidopsis thaliana
WRKY GCM
MA1305.2 MA1305 2 WRKY55 Arabidopsis thaliana
WRKY GCM
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0426.1

ChIP-seq Centrality
-log(P-value): 19476.2

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0426.1

ChIP-seq Centrality
-log(P-value): 19359.0

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: