Detailed information of matrix profile MA0516.2

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Profile summary
Name: SP2
Matrix ID: MA0516.2
Class: C2H2
Family: Three-zinc
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 14726517
Uniprot ID: Q02086  
Source: 28473536
Comment:

Sequence logo

Frequency matrix

         
A [ 352 503 101 17 27 7 18 45 12 8 0 327 43 67 180 608 106 ]
C [ 88 0 1 22 0 26 0 780 22 13 1 8 791 33 0 57 123 ]
G [ 203 221 679 390 774 793 795 52 788 786 774 456 127 84 76 171 308 ]
T [ 150 109 22 402 23 5 0 82 4 16 14 34 54 753 613 53 256 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0516.1 MA0516 1 SP2 Homo sapiens
Three-zinc C2H2
MA0516.2 MA0516 2 SP2 Homo sapiens
Three-zinc C2H2
MA0516.3 MA0516 3 SP2 Homo sapiens
Three-zinc C2H2
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0098.2

ChIP-seq Centrality
-log(P-value): 2381.67

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0098.2

ChIP-seq Centrality
-log(P-value): 2135.17

TFFM detailed summary logos

Description:

Alias:

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Consensus:

Included Models:

GC Content: