JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0586.3 SPL14 Arabidopsis thaliana C3H(C),C2HC SBP
MA0587.1 TCP16 Arabidopsis thaliana TCP
MA0587.2 TCP16 Arabidopsis thaliana TCP
MA0588.1 TGA1 Arabidopsis thaliana Basic Group
MA0588.2 TGA1 Arabidopsis thaliana Basic Group
MA0589.1 WRKY1 Arabidopsis thaliana GCM WRKY
MA0589.2 WRKY1 Arabidopsis thaliana GCM WRKY
MA0590.1 LFY Arabidopsis thaliana LEAFY
MA0591.1 Bach1::Mafk Mus musculus Basic Jun-related::Maf-related
MA0591.2 Bach1::Mafk Mus musculus Basic Jun-related::Maf-related
Showing 10 profiles of page 115 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.