Detailed information of matrix profile UN0836.1

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Profile summary

Name: SHN2
Matrix ID: UN0836.1
Class: AP2/EREBP
Family: ERF/DREB
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation:
Uniprot ID: Q9LFN7  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 281 25 91 331 50 22 238 16 56 306 50 81 256 6 56 253 25 47 206 59 116 ]
C [ 75 719 856 44 913 941 13 878 944 13 759 781 3 928 900 0 919 844 25 788 663 ]
G [ 144 122 19 406 28 6 616 28 0 513 31 22 378 9 13 600 13 19 631 3 34 ]
T [ 500 134 34 219 9 31 134 78 0 169 159 116 363 56 31 147 44 91 138 150 188 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0836.1 UN0836 1 SHN2 Arabidopsis thaliana
ERF/DREB AP2/EREBP
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: