Detailed information of matrix profile UN0562.1

  1. Home
  2. Matrix > UN0562.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: HOXB2::PAX5
Matrix ID: UN0562.1
Class: Homeo::Paired
Family: HOX::Paired
Collection: UNVALIDATED
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation:
Uniprot ID: P14652   Q02548  
Source: 26550823
Comment:

Sequence logo

Frequency matrix

         
A [ 6 153 886 886 2 45 493 243 6 0 157 11 125 886 94 127 181 ]
C [ 258 467 2 105 200 185 2 128 295 886 0 17 10 14 886 185 165 ]
G [ 315 13 178 195 3 886 361 220 886 1 886 3 886 127 7 470 338 ]
T [ 307 886 17 73 886 49 30 295 11 75 13 886 13 205 2 103 202 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0562.1 UN0562 1 HOXB2::PAX5 Homo sapiens
HOX::Paired Homeo::Paired
UN0562.2 UN0562 2 HOXB2::PAX5 Homo sapiens
HOX::Paired Homeo::Paired
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: