Detailed information of matrix profile UN0426.2

  1. Home
  2. Matrix > UN0426.2
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: TAGL1
Matrix ID: UN0426.2
Class: MADS
Family: Type
Collection: UNVALIDATED
Taxon: Plants
Species: Solanum lycopersicum
Data Type:
Validation:
Uniprot ID: E9JUM2  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 2930 1091 4576 4641 4647 4590 4562 320 461 ]
C [ 676 351 61 47 23 14 37 46 83 ]
G [ 401 2722 106 85 83 109 85 4328 4129 ]
T [ 844 687 108 78 98 138 167 157 178 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0426.1 UN0426 1 TAGL1 Solanum lycopersicum
Type MADS
UN0426.2 UN0426 2 TAGL1 Solanum lycopersicum
Type MADS
     

-log(P-value) = 2.49e-05

TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: