Detailed information of matrix profile UN0386.1

  1. Home
  2. Matrix > UN0386.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: AGL95
Matrix ID: UN0386.1
Class: MADS
Family: Type
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation:
Uniprot ID: Q6DR69  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 160 124 40 17 22 734 24 941 810 136 146 61 20 17 79 ]
C [ 393 104 22 955 176 74 18 17 15 215 556 22 25 934 247 ]
G [ 218 47 25 15 39 141 945 5 34 405 195 7 10 12 71 ]
T [ 229 724 913 13 763 50 13 37 141 244 103 911 945 37 603 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0386.1 UN0386 1 AGL95 Arabidopsis thaliana
Type MADS
UN0386.2 UN0386 2 AGL95 Arabidopsis thaliana
Type MADS
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: