Detailed information of matrix profile UN0355.1

  1. Home
  2. Matrix > UN0355.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: AT3G49930
Matrix ID: UN0355.1
Class: C2H2
Family: C2H2
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation:
Uniprot ID: Q9SN24  
Source: 27203113
Comment: not

Sequence logo

Frequency matrix

         
A [ 222 294 44 1068 35 23 40 1077 887 234 325 ]
C [ 290 286 90 10 1013 1078 5 7 139 362 205 ]
G [ 146 131 39 17 42 11 30 14 19 74 119 ]
T [ 466 413 951 29 34 12 1049 26 79 454 475 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0355.1 UN0355 1 AT3G49930 Arabidopsis thaliana
C2H2 C2H2
UN0355.2 UN0355 2 AT3G49930 Arabidopsis thaliana
C2H2 C2H2
     

-log(P-value) = 379.729

TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: