Detailed information of matrix profile MA1681.1

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Profile summary
Name: SRM1
Matrix ID: MA1681.1
Class: Tryptophan
Family: MYB-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q9FNN6  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 1356 1153 1274 2050 11 3062 20 3017 3005 90 913 743 958 1245 ]
C [ 254 375 358 135 4 44 10 21 27 128 246 264 357 392 ]
G [ 290 709 443 631 3125 19 13 25 41 2774 1692 234 390 543 ]
T [ 1250 913 1075 334 10 25 3107 87 77 158 299 1909 1445 970 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1681.1 MA1681 1 SRM1 Arabidopsis thaliana
MYB-related Tryptophan
MA1681.2 MA1681 2 SRM1 Arabidopsis thaliana
MYB-related Tryptophan
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0691.1

ChIP-seq Centrality
-log(P-value): 2241.22

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0691.1

ChIP-seq Centrality
-log(P-value): 2201.56

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: