Detailed information of matrix profile MA1664.1

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Profile summary
Name: HSFA6B
Matrix ID: MA1664.1
Class: Heat
Family: HSF
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 27493213
Uniprot ID: Q9LUH8  
Source: 27203113
Comment: No

Sequence logo

Frequency matrix

         
A [ 328 1 580 509 73 159 70 22 4 15 411 0 562 420 139 ]
C [ 61 1 2 6 154 191 34 8 572 101 45 5 13 34 121 ]
G [ 168 595 8 16 291 131 13 16 24 46 136 595 6 59 242 ]
T [ 43 3 10 69 82 119 483 554 0 438 8 0 19 87 98 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1664.1 MA1664 1 HSFA6B Arabidopsis thaliana
HSF Heat
MA1664.2 MA1664 2 HSFA6B Arabidopsis thaliana
HSF Heat
MA1664.3 MA1664 3 HSFA6B Arabidopsis thaliana
HSF Heat
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0671.1

ChIP-seq Centrality
-log(P-value): 2540.12

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0671.1

ChIP-seq Centrality
-log(P-value): 2523.12

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: