Detailed information of matrix profile MA1663.1

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Profile summary
Name: NAC050
Matrix ID: MA1663.1
Class: GCM
Family: NAC
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 26617990
Uniprot ID: Q9SQX9  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 0 0 0 6 80 179 189 175 295 1 599 441 0 60 255 544 ]
C [ 599 0 0 8 178 87 122 194 58 526 0 158 0 106 128 0 ]
G [ 0 68 0 585 93 231 86 50 184 28 0 0 599 98 0 0 ]
T [ 0 531 599 0 248 102 202 180 62 44 0 0 0 335 216 55 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1663.1 MA1663 1 NAC050 Arabidopsis thaliana
NAC GCM
MA1663.2 MA1663 2 NAC050 Arabidopsis thaliana
NAC GCM
MA1663.3 MA1663 3 NAC050 Arabidopsis thaliana
NAC GCM
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0648.1

ChIP-seq Centrality
-log(P-value): 18801.8

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0648.1

ChIP-seq Centrality
-log(P-value): 19064.4

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: