Detailed information of matrix profile MA1564.1

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Profile summary
Name: SP9
Matrix ID: MA1564.1
Class: C2H2
Family: Three-zinc
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 26187067
Uniprot ID: P0CG40  
Source: 28473536
Comment:

Sequence logo

Frequency matrix

         
A [ 660 588 353 412 30 14 173 9 96 284 518 226 ]
C [ 204 191 38 24 0 0 2451 17 56 113 309 952 ]
G [ 1167 1863 1259 2451 2451 2451 200 2451 1127 2451 2451 440 ]
T [ 420 188 1192 39 0 22 211 2 2451 321 566 834 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1564.1 MA1564 1 SP9 Homo sapiens
Three-zinc C2H2
MA1564.2 MA1564 2 SP9 Homo sapiens
Three-zinc C2H2
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0878.1

ChIP-seq Centrality
-log(P-value): 649.569

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0878.1

ChIP-seq Centrality
-log(P-value): 1061.14

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: