Detailed information of matrix profile MA1558.1

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Profile summary
Name: SNAI1
Matrix ID: MA1558.1
Class: C2H2
Family: More
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 26170144
Uniprot ID: O95863  
Source: 28473536
Comment:

Sequence logo

Frequency matrix

         
A [ 5274 6993 446 19982 1766 72 38 706 1639 10088 ]
C [ 3187 501 19982 297 517 5 0 0 10938 4592 ]
G [ 6410 12989 275 91 19982 19982 42 19982 5306 9894 ]
T [ 5112 3518 340 568 306 28 19982 311 9044 6356 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1558.1 MA1558 1 SNAI1 Homo sapiens
More C2H2
MA1558.2 MA1558 2 SNAI1 Homo sapiens
More C2H2
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0877.1

ChIP-seq Centrality
-log(P-value): 1798.78

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0877.1

ChIP-seq Centrality
-log(P-value): 1677.24

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: