Detailed information of matrix profile MA1552.1

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Profile summary
Name: RARB
Matrix ID: MA1552.1
Class: Nuclear
Family: Thyroid
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 1738600
Uniprot ID: P10826  
Source: 28473536
Comment: TF

Sequence logo

Frequency matrix

         
A [ 217 361 3 10 21 5 322 3 16 472 76 12 10 63 ]
C [ 30 45 17 4 64 472 0 5 8 26 472 472 101 128 ]
G [ 169 111 472 472 52 7 150 0 472 18 0 8 45 55 ]
T [ 56 0 31 76 472 16 3 472 4 13 7 16 371 226 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1552.1 MA1552 1 RARB Homo sapiens
Thyroid Nuclear
MA1552.2 MA1552 2 RARB Homo sapiens
Thyroid Nuclear
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0876.1

ChIP-seq Centrality
-log(P-value): 428.11

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0876.1

ChIP-seq Centrality
-log(P-value): 446.426

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: