Detailed information of matrix profile MA1541.1

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Profile summary
Name: NR6A1
Matrix ID: MA1541.1
Class: Nuclear
Family: GCNF-related
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 11578963
Uniprot ID: Q15406  
Source: 28473536
Comment:

Sequence logo

Frequency matrix

         
A [ 171 255 124 896 896 13 19 1 7 896 896 21 29 91 39 896 282 ]
C [ 197 473 896 4 91 9 12 74 896 0 96 15 11 185 896 20 177 ]
G [ 313 348 342 44 72 896 443 26 29 2 35 896 524 355 109 359 207 ]
T [ 216 896 132 11 51 62 453 896 40 14 65 62 373 896 254 41 230 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1541.1 MA1541 1 NR6A1 Homo sapiens
GCNF-related Nuclear
MA1541.2 MA1541 2 NR6A1 Homo sapiens
GCNF-related Nuclear
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0544.1

ChIP-seq Centrality
-log(P-value): 5461.15

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0544.1

ChIP-seq Centrality
-log(P-value): 3305.01

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: