Detailed information of matrix profile MA1409.1

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Profile summary
Name: OsRR22
Matrix ID: MA1409.1
Class: Tryptophan
Family: GARP_ARR-B
Collection: CORE
Taxon: Plants
Species: Oryza sativa
Data Type: PBM
Validation: 12610214
Uniprot ID: Q5SML5  
Source: 27931185
Comment:

Sequence logo

Frequency matrix

         
A [ 51257 86870 486 97906 495 72395 444 1690 13926 20468 ]
C [ 11381 3042 522 287 484 7724 91648 2838 33145 11356 ]
G [ 11771 6041 97670 778 510 464 611 92633 46756 5511 ]
T [ 25591 4047 1322 1028 98511 19416 7297 2838 6173 62666 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1409.1 MA1409 1 OsRR22 Oryza sativa
GARP_ARR-B Tryptophan
MA1409.2 MA1409 2 OsRR22 Oryza sativa
GARP_ARR-B Tryptophan
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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Consensus:

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GC Content: