Detailed information of matrix profile MA1377.1

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Profile summary
Name: PLT1
Matrix ID: MA1377.1
Class: AP2/EREBP
Family: AP2
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 11058102
Uniprot ID: Q5YGP8  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 36 38 43 2 28 0 13 2 78 70 133 78 31 6 3 16 21 37 55 ]
C [ 54 49 10 114 142 6 126 0 1 0 5 16 64 156 3 24 0 111 97 ]
G [ 33 28 62 3 9 0 9 193 103 82 20 9 41 4 187 9 171 5 13 ]
T [ 72 80 80 76 16 189 47 0 13 43 37 92 59 29 2 146 3 42 30 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1377.1 MA1377 1 PLT1 Arabidopsis thaliana
AP2 AP2/EREBP
MA1377.2 MA1377 2 PLT1 Arabidopsis thaliana
AP2 AP2/EREBP
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0847.1

ChIP-seq Centrality
-log(P-value): 289.609

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0847.1

ChIP-seq Centrality
-log(P-value): 288.021

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: