Detailed information of matrix profile MA1377.1

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Profile summary
Name: PLT1
Matrix ID: MA1377.1
Class: AP2/EREBP
Family: AP2
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 11058102
Uniprot ID: Q5YGP8  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 30 42 3 146 2 29 59 92 37 43 13 0 47 189 16 76 80 80 72 ]
C [ 13 5 171 9 187 4 41 9 20 82 103 193 9 0 9 3 62 28 33 ]
G [ 97 111 0 24 3 156 64 16 5 0 1 0 126 6 142 114 10 49 54 ]
T [ 55 37 21 16 3 6 31 78 133 70 78 2 13 0 28 2 43 38 36 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1377.1 MA1377 1 PLT1 Arabidopsis thaliana
AP2 AP2/EREBP
MA1377.2 MA1377 2 PLT1 Arabidopsis thaliana
AP2 AP2/EREBP
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0847.1

ChIP-seq Centrality
-log(P-value): 289.609

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0847.1

ChIP-seq Centrality
-log(P-value): 288.021

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: