Detailed information of matrix profile MA1371.1

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Profile summary
Name: IDD4
Matrix ID: MA1371.1
Class: C2H2
Family: IDD
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: Q8GYC1  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 213 429 57 430 510 470 529 186 16 580 0 585 581 547 448 309 264 ]
C [ 233 5 250 0 0 29 42 301 0 10 591 0 3 15 24 71 72 ]
G [ 42 140 242 14 0 78 16 78 575 0 0 6 7 23 35 61 61 ]
T [ 103 17 42 147 81 14 4 26 0 1 0 0 0 6 84 150 194 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1371.1 MA1371 1 IDD4 Arabidopsis thaliana
IDD C2H2
MA1371.2 MA1371 2 IDD4 Arabidopsis thaliana
IDD C2H2
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0351.1

ChIP-seq Centrality
-log(P-value): 22562.5

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0351.1

ChIP-seq Centrality
-log(P-value): 22137.6

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: