Detailed information of matrix profile MA1371.1

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Profile summary
Name: IDD4
Matrix ID: MA1371.1
Class: C2H2
Family: IDD
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: Q8GYC1  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 194 150 84 6 0 0 0 1 0 26 4 14 81 147 42 17 103 ]
C [ 61 61 35 23 7 6 0 0 575 78 16 78 0 14 242 140 42 ]
G [ 72 71 24 15 3 0 591 10 0 301 42 29 0 0 250 5 233 ]
T [ 264 309 448 547 581 585 0 580 16 186 529 470 510 430 57 429 213 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1371.1 MA1371 1 IDD4 Arabidopsis thaliana
IDD C2H2
MA1371.2 MA1371 2 IDD4 Arabidopsis thaliana
IDD C2H2
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0351.1

ChIP-seq Centrality
-log(P-value): 22562.5

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0351.1

ChIP-seq Centrality
-log(P-value): 22137.6

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: