Detailed information of matrix profile MA1369.1

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Profile summary
Name: HDG1
Matrix ID: MA1369.1
Class: Homeo
Family: HD-ZIP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q9M2E8  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 179 23 518 400 0 126 598 599 0 62 167 ]
C [ 56 218 67 0 0 0 0 0 0 4 291 ]
G [ 274 0 0 0 0 0 1 0 0 488 23 ]
T [ 90 358 14 199 599 473 0 0 599 45 118 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1369.1 MA1369 1 HDG1 Arabidopsis thaliana
HD-ZIP Homeo
MA1369.2 MA1369 2 HDG1 Arabidopsis thaliana
HD-ZIP Homeo
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0350.1

ChIP-seq Centrality
-log(P-value): 17417.2

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0350.1

ChIP-seq Centrality
-log(P-value): 17117.8

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: