Detailed information of matrix profile MA1365.2

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Profile summary
Name: AT5G47660
Matrix ID: MA1365.2
Class: Tryptophan
Family: Trihelix
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q9FGJ1  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 1914 1880 604 382 135 59 5415 0 165 2006 1345 ]
C [ 679 685 34 104 50 38 0 5429 4639 808 1096 ]
G [ 822 631 1 23 8 30 14 0 76 1149 540 ]
T [ 2014 2233 4790 4920 5236 5302 0 0 549 1466 2448 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1365.1 MA1365 1 AT5G47660 Arabidopsis thaliana
Trihelix Tryptophan
MA1365.2 MA1365 2 AT5G47660 Arabidopsis thaliana
Trihelix Tryptophan
MA1365.3 MA1365 3 AT5G47660 Arabidopsis thaliana
Trihelix Tryptophan
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0652.1

ChIP-seq Centrality
-log(P-value): 8057.51

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0652.1

ChIP-seq Centrality
-log(P-value): 7845.66

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: