Detailed information of matrix profile MA1251.1

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Profile summary
Name: RAP2-9
Matrix ID: MA1251.1
Class: AP2/EREBP
Family: ERF/DREB
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 9952441
Uniprot ID: Q8W3M3  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 144 174 144 145 184 147 173 197 44 6 550 0 0 0 566 0 396 278 170 ]
C [ 196 117 151 182 127 170 187 66 259 582 0 593 593 0 9 593 162 100 134 ]
G [ 94 125 106 93 137 100 82 147 86 3 42 0 0 593 0 0 14 6 72 ]
T [ 159 177 192 173 145 176 151 183 204 2 1 0 0 0 18 0 21 209 217 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1251.1 MA1251 1 RAP2-9 Arabidopsis thaliana
ERF/DREB AP2/EREBP
MA1251.2 MA1251 2 RAP2-9 Arabidopsis thaliana
ERF/DREB AP2/EREBP
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0322.1

ChIP-seq Centrality
-log(P-value): 5285.24

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0322.1

ChIP-seq Centrality
-log(P-value): 5191.52

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: