Detailed information of matrix profile MA1196.1

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Profile summary
Name: AT5G05790
Matrix ID: MA1196.1
Class: Tryptophan
Family: MYB-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID:
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 140 339 210 140 341 275 0 587 0 453 565 33 191 257 130 ]
C [ 41 37 26 116 57 15 0 0 0 15 0 67 40 33 59 ]
G [ 256 119 0 200 70 164 587 0 0 112 22 348 340 2 79 ]
T [ 150 92 351 131 119 133 0 0 587 7 0 139 16 295 319 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1196.1 MA1196 1 AT5G05790 Arabidopsis thaliana
MYB-related Tryptophan
MA1196.2 MA1196 2 AT5G05790 Arabidopsis thaliana
MYB-related Tryptophan
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0272.1

ChIP-seq Centrality
-log(P-value): 3201.35

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0272.1

ChIP-seq Centrality
-log(P-value): 2933.91

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: