Detailed information of matrix profile MA1160.1

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Profile summary
Name: IDD6
Matrix ID: MA1160.1
Class: C2H2
Family: IDD
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: Q8RWX7  
Source: 27203113
Comment: No

Sequence logo

Frequency matrix

         
A [ 61 61 60 72 58 25 0 0 0 0 0 2 13 2 7 35 65 21 4 38 ]
C [ 36 32 43 27 23 15 6 2 6 1 2 237 21 9 32 0 5 89 66 15 ]
G [ 32 34 32 28 28 11 5 0 1 240 15 0 154 14 13 6 1 108 4 117 ]
T [ 113 115 107 115 133 191 231 240 235 1 225 3 54 217 190 201 171 24 168 72 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1160.1 MA1160 1 IDD6 Arabidopsis thaliana
IDD C2H2
MA1160.2 MA1160 2 IDD6 Arabidopsis thaliana
IDD C2H2
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

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GC Content: