Detailed information of matrix profile MA1158.1

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Profile summary
Name: MGP
Matrix ID: MA1158.1
Class: C2H2
Family: IDD
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: Q9ZWA6  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 159 163 141 164 139 63 3 0 0 0 0 0 10 1 74 80 127 83 42 154 ]
C [ 104 94 112 68 56 19 16 4 16 0 1 594 52 20 73 2 50 185 139 50 ]
G [ 68 80 72 77 80 28 9 3 0 594 0 0 379 21 26 0 15 183 50 203 ]
T [ 263 257 269 285 319 484 566 587 578 0 593 0 153 552 421 512 402 143 363 187 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1158.1 MA1158 1 MGP Arabidopsis thaliana
IDD C2H2
MA1158.2 MA1158 2 MGP Arabidopsis thaliana
IDD C2H2
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

Included Models:

GC Content: