Detailed information of matrix profile MA1158.1

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Profile summary
Name: MGP
Matrix ID: MA1158.1
Class: C2H2
Family: IDD
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: Q9ZWA6  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 187 363 143 402 512 421 552 153 0 593 0 578 587 566 484 319 285 269 257 263 ]
C [ 203 50 183 15 0 26 21 379 0 0 594 0 3 9 28 80 77 72 80 68 ]
G [ 50 139 185 50 2 73 20 52 594 1 0 16 4 16 19 56 68 112 94 104 ]
T [ 154 42 83 127 80 74 1 10 0 0 0 0 0 3 63 139 164 141 163 159 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1158.1 MA1158 1 MGP Arabidopsis thaliana
IDD C2H2
MA1158.2 MA1158 2 MGP Arabidopsis thaliana
IDD C2H2
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

Included Models:

GC Content: