Detailed information of matrix profile MA1157.1

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Profile summary
Name: NUC
Matrix ID: MA1157.1
Class: C2H2
Family: IDD
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: Q9FFH3  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 158 343 129 366 493 372 515 120 0 565 0 562 557 510 411 282 239 227 235 241 ]
C [ 227 55 202 15 3 46 33 381 0 5 570 0 8 19 42 85 84 83 90 87 ]
G [ 54 148 183 41 0 89 19 51 570 0 0 8 5 33 47 76 77 109 104 103 ]
T [ 131 24 56 148 74 63 3 18 0 0 0 0 0 8 70 127 170 151 141 139 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1157.1 MA1157 1 NUC Arabidopsis thaliana
IDD C2H2
MA1157.2 MA1157 2 NUC Arabidopsis thaliana
IDD C2H2
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: