Detailed information of matrix profile MA1157.1

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Profile summary
Name: NUC
Matrix ID: MA1157.1
Class: C2H2
Family: IDD
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: Q9FFH3  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 139 141 151 170 127 70 8 0 0 0 0 0 18 3 63 74 148 56 24 131 ]
C [ 103 104 109 77 76 47 33 5 8 0 0 570 51 19 89 0 41 183 148 54 ]
G [ 87 90 83 84 85 42 19 8 0 570 5 0 381 33 46 3 15 202 55 227 ]
T [ 241 235 227 239 282 411 510 557 562 0 565 0 120 515 372 493 366 129 343 158 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1157.1 MA1157 1 NUC Arabidopsis thaliana
IDD C2H2
MA1157.2 MA1157 2 NUC Arabidopsis thaliana
IDD C2H2
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: