Detailed information of matrix profile MA1026.2

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Profile summary
Name: ATHB-15
Matrix ID: MA1026.2
Class: Homeo
Family: HD-ZIP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 11247607
Uniprot ID: Q9ZU11  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 265 363 268 212 199 13 518 590 0 27 590 0 10 494 97 ]
C [ 43 31 35 63 46 97 1 0 0 82 0 0 0 1 248 ]
G [ 158 84 60 131 329 0 68 0 0 462 0 0 218 87 63 ]
T [ 124 112 227 184 16 480 3 0 590 19 0 590 362 8 182 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1026.1 MA1026 1 ATHB-15 Arabidopsis thaliana
HD-ZIP Homeo
MA1026.2 MA1026 2 ATHB-15 Arabidopsis thaliana
HD-ZIP Homeo
MA1026.3 MA1026 3 ATHB-15 Arabidopsis thaliana
HD-ZIP Homeo
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0285.1

ChIP-seq Centrality
-log(P-value): 11414.3

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0285.1

ChIP-seq Centrality
-log(P-value): 11383.6

TFFM detailed summary logos

Description:

Alias:

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Consensus:

Included Models:

GC Content: