Detailed information of matrix profile MA1000.2

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Profile summary
Name: ERF105
Matrix ID: MA1000.2
Class: AP2/EREBP
Family: ERF/DREB
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 9756931
Uniprot ID: Q8VY90  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 144 149 168 189 50 0 21 1 0 0 21 1 78 211 123 ]
C [ 57 181 44 37 307 0 0 569 0 1 544 0 109 204 27 ]
G [ 278 36 257 312 0 586 565 0 586 585 0 523 382 60 330 ]
T [ 107 220 117 48 229 0 0 16 0 0 21 62 17 111 106 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1000.1 MA1000 1 ERF105 Arabidopsis thaliana
ERF/DREB AP2/EREBP
MA1000.2 MA1000 2 ERF105 Arabidopsis thaliana
ERF/DREB AP2/EREBP
MA1000.3 MA1000 3 ERF105 Arabidopsis thaliana
ERF/DREB AP2/EREBP
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0329.1

ChIP-seq Centrality
-log(P-value): 4027.28

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0329.1

ChIP-seq Centrality
-log(P-value): 3838.15

TFFM detailed summary logos

Description:

Alias:

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Included Models:

GC Content: