Detailed information of matrix profile MA0743.1

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Profile summary
Name: SCRT1
Matrix ID: MA0743.1
Class: C2H2
Family: More
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 11274425
Uniprot ID: Q9BWW7  
Source: 23332764
Comment:

Sequence logo

Frequency matrix

         
A [ 472 452 30 7 1046 1071 1 1075 190 0 0 154 139 187 269 ]
C [ 167 203 40 1447 35 0 1501 0 3 0 3 42 217 302 317 ]
G [ 574 89 1400 3 0 0 0 0 1461 1629 2 1302 1034 298 118 ]
T [ 111 410 519 20 24 0 0 0 5 2 1136 255 502 467 524 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0743.1 MA0743 1 SCRT1 Homo sapiens
More C2H2
MA0743.2 MA0743 2 SCRT1 Homo sapiens
More C2H2
MA0743.3 MA0743 3 SCRT1 Homo sapiens
More C2H2
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0580.1

ChIP-seq Centrality
-log(P-value): 88772.1

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0580.1

ChIP-seq Centrality
-log(P-value): 88787.6

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: