Detailed information of matrix profile MA0681.1

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Profile summary
Name: Phox2b
Matrix ID: MA0681.1
Class: Homeo
Family: Paired-related
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 22323723
Uniprot ID: Q99453  
Source: 23332764
Comment: Data

Sequence logo

Frequency matrix

         
A [ 2912 23359 23359 102 604 12967 12398 23359 4 1151 23359 ]
C [ 1102 50 0 394 4248 2149 5380 905 63 2656 611 ]
G [ 202 1130 9 214 1110 10392 10961 9263 25 270 1710 ]
T [ 23359 1514 0 23359 23359 3134 955 1784 23359 23359 3604 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0681.1 MA0681 1 Phox2b Mus musculus
Paired-related Homeo
MA0681.2 MA0681 2 PHOX2B Homo sapiens
Paired-related Homeo
MA0681.3 MA0681 3 PHOX2B Homo sapiens
Paired-related Homeo
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0554.1

ChIP-seq Centrality
-log(P-value): 56026.7

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0554.1

ChIP-seq Centrality
-log(P-value): 55230.8

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: