Detailed information of matrix profile MA0658.1

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Profile summary
Name: LHX6
Matrix ID: MA0658.1
Class: Homeo
Family: HD-LIM
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 18585359
Uniprot ID: Q9UPM6  
Source: 23332764
Comment:

Sequence logo

Frequency matrix

         
A [ 1857 529 0 4438 4438 0 0 4438 1668 548 ]
C [ 769 3015 253 90 14 98 766 0 637 1654 ]
G [ 1548 791 28 487 0 15 108 243 2769 728 ]
T [ 264 1422 4438 0 0 4438 4438 2 194 1507 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0658.1 MA0658 1 LHX6 Homo sapiens
HD-LIM Homeo
MA0658.2 MA0658 2 LHX6 Homo sapiens
HD-LIM Homeo
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0758.1

ChIP-seq Centrality
-log(P-value): 235.688

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0758.1

ChIP-seq Centrality
-log(P-value): 150.736

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: