Detailed information of matrix profile MA0554.1

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Profile summary
Name: SOC1
Matrix ID: MA0554.1
Class: MADS
Family: Type
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-chip
Validation: 8774892
Uniprot ID: O64645  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 288 172 65 62 117 20 0 459 137 130 22 98 90 181 17 ]
C [ 123 264 27 0 47 855 617 37 78 6 8 24 71 10 23 ]
G [ 99 113 34 51 89 13 9 56 0 0 0 0 86 683 665 ]
T [ 378 339 762 775 635 0 262 336 673 752 858 766 641 14 183 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0554.1 MA0554 1 SOC1 Arabidopsis thaliana
Type MADS
MA0554.2 MA0554 2 SOC1 Arabidopsis thaliana
Type MADS
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0585.1

ChIP-seq Centrality
-log(P-value): 412.455

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0585.1

ChIP-seq Centrality
-log(P-value): 420.873

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: