Detailed information of matrix profile MA0548.2

  1. Home
  2. Matrix > MA0548.2

Profile summary
Name: AGL15
Matrix ID: MA0548.2
Class: MADS
Family: Type
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 12743119
Uniprot ID: Q38847  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 315 126 88 38 196 14 0 251 434 584 433 373 269 164 3 486 575 513 111 ]
C [ 50 185 29 5 28 585 473 168 31 0 4 53 50 0 0 21 3 5 137 ]
G [ 77 175 7 13 50 0 1 42 45 8 0 85 80 435 596 8 5 33 218 ]
T [ 157 113 475 543 325 0 125 138 89 7 162 88 200 0 0 84 16 48 133 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0548.1 MA0548 1 AGL15 Arabidopsis thaliana
Type MADS
MA0548.2 MA0548 2 AGL15 Arabidopsis thaliana
Type MADS
MA0548.3 MA0548 3 AGL15 Arabidopsis thaliana
Type MADS
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0219.1

ChIP-seq Centrality
-log(P-value): 3163.66

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0219.1

ChIP-seq Centrality
-log(P-value): 3184.64

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: