Detailed information of matrix profile MA0548.2

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Profile summary
Name: AGL15
Matrix ID: MA0548.2
Class: MADS
Family: Type
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 12743119
Uniprot ID: Q38847  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 133 48 16 84 0 0 200 88 162 7 89 138 125 0 325 543 475 113 157 ]
C [ 218 33 5 8 596 435 80 85 0 8 45 42 1 0 50 13 7 175 77 ]
G [ 137 5 3 21 0 0 50 53 4 0 31 168 473 585 28 5 29 185 50 ]
T [ 111 513 575 486 3 164 269 373 433 584 434 251 0 14 196 38 88 126 315 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0548.1 MA0548 1 AGL15 Arabidopsis thaliana
Type MADS
MA0548.2 MA0548 2 AGL15 Arabidopsis thaliana
Type MADS
MA0548.3 MA0548 3 AGL15 Arabidopsis thaliana
Type MADS
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0219.1

ChIP-seq Centrality
-log(P-value): 3163.66

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0219.1

ChIP-seq Centrality
-log(P-value): 3184.64

TFFM detailed summary logos

Description:

Alias:

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Consensus:

Included Models:

GC Content: