Detailed information of matrix profile MA0508.2

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Profile summary
Name: PRDM1
Matrix ID: MA0508.2
Class: C2H2
Family: More
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 20421211
Uniprot ID: O75626  
Source: 29126285
Comment:

Sequence logo

Frequency matrix

         
A [ 594 1156 0 3755 3763 3751 5 1 688 1971 ]
C [ 282 172 2 2 6 25 1 11 310 555 ]
G [ 2428 697 3777 5 2 2 3776 2 2125 573 ]
T [ 481 1760 6 23 14 7 3 3771 662 686 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0508.1 MA0508 1 PRDM1 Homo sapiens
More C2H2
MA0508.2 MA0508 2 PRDM1 Homo sapiens
More C2H2
MA0508.3 MA0508 3 PRDM1 Homo sapiens
More C2H2
MA0508.4 MA0508 4 PRDM1 Homo sapiens
More C2H2
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0087.2

ChIP-seq Centrality
-log(P-value): 2588.63

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0087.2

ChIP-seq Centrality
-log(P-value): 2786.5

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: