Detailed information of matrix profile MA0508.1

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Profile summary
Name: PRDM1
Matrix ID: MA0508.1
Class: C2H2
Family: More
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 20421211
Uniprot ID: O75626  
Source: ENCODE
Comment:

Sequence logo

Frequency matrix

         
A [ 1779 1649 3148 3486 4173 422 728 211 4603 4161 4497 159 117 1057 2042 ]
C [ 471 298 345 439 0 0 110 0 0 0 0 142 458 498 778 ]
G [ 1037 2331 688 442 430 4038 930 4392 0 430 39 4186 520 2239 973 ]
T [ 1316 325 422 236 0 143 2835 0 0 12 67 116 3508 809 810 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0508.1 MA0508 1 PRDM1 Homo sapiens
More C2H2
MA0508.2 MA0508 2 PRDM1 Homo sapiens
More C2H2
MA0508.3 MA0508 3 PRDM1 Homo sapiens
More C2H2
MA0508.4 MA0508 4 PRDM1 Homo sapiens
More C2H2
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0087.1

ChIP-seq Centrality
-log(P-value): 2726.03

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0087.1

ChIP-seq Centrality
-log(P-value): 2658.44

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: