Detailed information of matrix profile MA0508.1

  1. Home
  2. Matrix > MA0508.1

Profile summary
Name: PRDM1
Matrix ID: MA0508.1
Class: C2H2
Family: More
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 20421211
Uniprot ID: O75626  
Source: ENCODE
Comment:

Sequence logo

Frequency matrix

         
A [ 810 809 3508 116 67 12 0 0 2835 143 0 236 422 325 1316 ]
C [ 973 2239 520 4186 39 430 0 4392 930 4038 430 442 688 2331 1037 ]
G [ 778 498 458 142 0 0 0 0 110 0 0 439 345 298 471 ]
T [ 2042 1057 117 159 4497 4161 4603 211 728 422 4173 3486 3148 1649 1779 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0508.1 MA0508 1 PRDM1 Homo sapiens
More C2H2
MA0508.2 MA0508 2 PRDM1 Homo sapiens
More C2H2
MA0508.3 MA0508 3 PRDM1 Homo sapiens
More C2H2
MA0508.4 MA0508 4 PRDM1 Homo sapiens
More C2H2
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0087.1

ChIP-seq Centrality
-log(P-value): 2726.03

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0087.1

ChIP-seq Centrality
-log(P-value): 2658.44

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: