Detailed information of matrix profile MA0005.3

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Profile summary
Name: AG
Matrix ID: MA0005.3
Class: MADS
Family: Type
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 7901838
Uniprot ID: P17839  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 11 12 22 10 2 19 23 40 13 17 26 1 0 21 55 51 ]
C [ 9 5 5 54 57 20 11 1 1 0 6 0 0 8 1 3 ]
G [ 6 4 17 0 0 8 15 0 0 2 3 65 66 8 0 3 ]
T [ 40 45 22 2 7 19 17 25 52 47 31 0 0 29 10 9 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0005.1 MA0005 1 AG Arabidopsis thaliana
Type MADS
MA0005.2 MA0005 2 AG Arabidopsis thaliana
Type MADS
MA0005.3 MA0005 3 AG Arabidopsis thaliana
Type MADS
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: