Detailed information of deep learning profile BP000808.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000808.1
Cell line/tissue: GM12878
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR331HPA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Contribution weight matrix (CWM)

     
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Frequency matrix

         
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Hypothetical CWM

       
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Other motifs identified by TF-MoDISco

Number of seqlets: 1032

PFM

       
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CWM

       
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HCWM

       
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Number of seqlets: 792

PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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CWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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HCWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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Number of seqlets: 651

PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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CWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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HCWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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Number of seqlets: 89

PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

CWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

HCWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

Number of seqlets: 21

PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

CWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

HCWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

Number of seqlets: 20

PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

CWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

HCWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

Unique motifs

This is a placeholder for the motifs that are found to be specific to this particular model, i.e., not found in other models trained for GABPA.

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000043.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000054.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000062.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000088.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000126.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000178.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000180.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000192.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000526.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000527.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages