JASPAR CORE

  1. Home
  2. Collection core

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1960.1 MGA::EVX1 Homo sapiens T-Box::Homeo TBX6-related::HOX
MA1960.2 MGA::EVX1 Homo sapiens T-Box::Homeo TBX6-related::HOX
MA1961.1 PATZ1 Homo sapiens C2H2 Factors
MA1961.2 PATZ1 Homo sapiens C2H2 Factors
MA1962.1 POU2F1::SOX2 Homo sapiens Homeo::High-mobility POU::SOX-related
MA1963.1 SATB1 Homo sapiens Homeo HD-CUT
MA1963.2 SATB1 Homo sapiens Homeo HD-CUT
MA1964.1 SMAD2 Homo sapiens SMAD/NF-1 SMAD
MA1964.2 SMAD2 Homo sapiens SMAD/NF-1 SMAD
MA1965.1 SP5 Homo sapiens C2H2 Three-zinc
Showing 10 profiles of page 371 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.