JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0119.1 NFIC::TLX1 Homo sapiens SMAD/NF-1::Homeo Nuclear::NK
MA0121.1 ARR10 Arabidopsis thaliana Tryptophan GARP_ARR-B
MA0121.2 ARR10 Arabidopsis thaliana Tryptophan GARP_ARR-B
MA0122.1 Nkx3-2 Mus musculus Homeo NK
MA0122.2 NKX3-2 Homo sapiens Homeo NK
MA0122.3 Nkx3-2 Mus musculus Homeo NK
MA0122.4 Nkx3-2 Mus musculus Homeo NK
MA0123.1 abi4 Zea mays AP2/EREBP ERF/DREB
MA0124.1 NKX3-1 Homo sapiens Homeo NK
MA0124.2 Nkx3-1 Mus musculus Homeo NK
Showing 10 profiles of page 32 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.