JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0872.1 TFAP2A Homo sapiens Basic AP-2
MA0873.1 HOXD12 Homo sapiens Homeo HOX
MA0873.2 HOXD12 Homo sapiens Homeo HOX
MA0874.1 Arx Mus musculus Homeo Paired-related
MA0874.2 Arx Mus musculus Homeo Paired-related
MA0875.1 BARX1 Homo sapiens Homeo NK
MA0875.2 BARX1 Homo sapiens Homeo NK
MA0876.1 BSX Homo sapiens Homeo NK
MA0876.2 BSX Homo sapiens Homeo NK
MA0877.1 Barhl1 Mus musculus Homeo NK
Showing 10 profiles of page 173 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.