JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1147.1 NR4A2::RXRA Homo sapiens Nuclear NGFI-B-related::RXR-related
MA1147.2 NR4A2::RXRA Homo sapiens Nuclear NGFI-B-related::RXR-related
MA1148.1 PPARA::RXRA Homo sapiens Nuclear Thyroid::RXR-related
MA1148.2 PPARA::RXRA Homo sapiens Nuclear Thyroid::RXR-related
MA1149.1 RARA::RXRG Homo sapiens Nuclear Thyroid::RXR-related
MA1149.2 RARA::RXRG Homo sapiens Nuclear Thyroid::RXR-related
MA1150.1 RORB Homo sapiens Nuclear Thyroid
MA1150.2 RORB Homo sapiens Nuclear Thyroid
MA1151.1 RORC Homo sapiens Nuclear Thyroid
MA1151.2 RORC Homo sapiens Nuclear Thyroid
Showing 10 profiles of page 225 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.