JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA1048.1 ERF018 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1049.1 ERF094 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1049.2 ERF094 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1050.1 OsI_08196 Oryza sativa Indica Group TCP
MA1051.1 RAP2-3 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1053.1 ERF109 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1054.1 ARALYDRAFT_897773 Arabidopsis lyrata subsp. lyrata TCP
MA1054.2 ARALYDRAFT_897773 Arabidopsis lyrata subsp. lyrata TCP
MA1055.1 SPL1 Arabidopsis thaliana C3H(C),C2HC SBP
MA1055.2 SPL1 Arabidopsis thaliana C3H(C),C2HC SBP
Showing 10 profiles of page 205 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.