JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0065.1 PPARG::RXRA Homo sapiens Nuclear Thyroid::RXR-related
MA0065.2 Pparg::Rxra Mus musculus Nuclear Thyroid::RXR-related
MA0065.3 Pparg::Rxra Mus musculus Nuclear Thyroid::RXR-related
MA0066.1 PPARG Homo sapiens Nuclear Thyroid
MA0066.2 PPARG Homo sapiens Nuclear Thyroid
MA0067.1 Pax2 Mus musculus Paired Paired
MA0067.2 PAX2 Homo sapiens Paired Paired
MA0067.3 PAX2 Homo sapiens Paired Paired
MA0068.1 Pax4 Mus musculus Paired Paired
MA0068.2 PAX4 Homo sapiens Paired Paired
Showing 10 profiles of page 17 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.