Detailed information of matrix profile UN0559.1

  1. Home
  2. Matrix > UN0559.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: HOXB13::ELK1
Matrix ID: UN0559.1
Class: Homeo::Tryptophan
Family: HOX::Ets-related
Collection: UNVALIDATED
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation:
Uniprot ID: P19419   Q92826  
Source: 26550823
Comment:

Sequence logo

Frequency matrix

         
A [ 28 6 3 42 147 18 35 147 0 19 2 0 0 3 19 20 ]
C [ 11 11 8 16 3 43 16 0 134 14 0 147 147 0 42 69 ]
G [ 38 8 1 6 0 0 59 82 30 5 0 0 0 94 105 7 ]
T [ 69 147 147 147 22 88 36 3 13 147 147 7 8 52 28 78 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0559.1 UN0559 1 HOXB13::ELK1 Homo sapiens
HOX::Ets-related Homeo::Tryptophan
UN0559.2 UN0559 2 HOXB13::ELK1 Homo sapiens
HOX::Ets-related Homeo::Tryptophan
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: